Transcript: lnc-TMEM174-1:3

Basic information

LNCipedia transcript ID: lnc-TMEM174-1:3 
LNCipedia gene ID: lnc-TMEM174-1
Ensembl Gene ID: ENSG00000249743
Ensembl Transcript ID: ENST00000427584
Location (hg19): chr5:72509809-72540647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009419; ENST00000427584; ENST00000427584.2; RP11-60A8.1-003; OTTHUMT00000369161.1; NONHSAT102108
Alternative gene names: XLOC_004423; linc-BTF3-5; ENSG00000249743; RP11-60A8.1; ENSG00000249743.1; OTTHUMG00000162463.3; ENSG00000249743.5; AC116345.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.2624 non-coding 
CPAT coding probability 11.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM174-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM174-1:3
3.1 lnc-TMEM174-1:3
4.0 lnc-TMEM174-1:3
4.1 lnc-TMEM174-1:3
5.0 lnc-TMEM174-1:3
5.1 lnc-MAP1B-18:8
5.2 lnc-TMEM174-1:3