Transcript: lnc-TMEM18-11:1

Basic information

LNCipedia transcript ID: lnc-TMEM18-11:1 
LNCipedia gene ID: lnc-TMEM18-11
Ensembl Gene ID: ENSG00000234796
Ensembl Transcript ID: ENST00000427019
Location (hg19): chr2:906612-916810
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003147; ENST00000427019.1; AC113607.3-001; OTTHUMT00000322408.1; NONHSAT068626
Alternative gene names: XLOC_001938; linc-TMEM18-2; ENSG00000234796.1; AC113607.3; OTTHUMG00000151371.1; AC113607.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5233 non-coding 
CPAT coding probability 9.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM18-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM18-11:1
3.1 lnc-TMEM18-11:1
4.0 lnc-TMEM18-11:1
4.1 lnc-TMEM18-11:1
5.0 lnc-TMEM18-11:1
5.1 lnc-RAD51AP2-217:1
5.2 lnc-TMEM18-11:1