Transcript: lnc-TMEM183A-5:2

Basic information

LNCipedia transcript ID: lnc-TMEM183A-5:2 
LNCipedia gene ID: lnc-TMEM183A-5
Location (hg19): chr1:202830882-202844369
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2316 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456105.1; RP11-480I12.7-001; OTTHUMT00000099158.1; NONHSAT008859
Alternative gene names: ENSG00000234996.2; RP11-480I12.7; OTTHUMG00000041389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
IITNWDDMEK 100% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score 49.8557 non-coding 
CPAT coding probability 61.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM183A-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-480I12.4.1-5:1
4.0 lnc-RP11-480I12.4.1-5:1
4.1 lnc-RP11-480I12.4.1-5:1
5.0 lnc-RP11-480I12.4.1-5:1
5.1 lnc-ADORA1-8:2
5.2 lnc-TMEM183A-5:2