Transcript: lnc-TMEM183A-5:8

Basic information

LNCipedia transcript ID: lnc-TMEM183A-5:8 
LNCipedia gene ID: lnc-TMEM183A-5
Location (hg19): chr1:202830882-202848159
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6086 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234996.3|MICT00000028174.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
IITNWDDMEK 100% sense-3
Lee translation initiation sites non-coding 
PhyloCSF score 49.8557 non-coding 
CPAT coding probability 43.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM183A-5:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-480I12.4.1-5:6
5.0 lnc-RP11-480I12.4.1-5:6
5.1 lnc-ADORA1-8:8
5.2 lnc-TMEM183A-5:8