Transcript: lnc-TMEM189-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM189-2:1 
LNCipedia gene ID: lnc-TMEM189-2
Location (hg19): chr20:48864180-48883632
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2415 bp
Exons: 6
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000513193
Alternative gene names: ENSG00000250931


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.0939 non-coding 
CPAT coding probability 16.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM189-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM189-2:1
3.1 lnc-TMEM189-2:1
4.0 lnc-TMEM189-2:1
4.1 lnc-TMEM189-2:1
5.0 lnc-TMEM189-2:1
5.1 lnc-SPATA2-8:4
5.2 lnc-TMEM189-2:1