Transcript: lnc-TMEM220-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM220-1:1 
LNCipedia gene ID: lnc-TMEM220-1
Location (hg19): chr17:10644585-10672333
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000579529.1; CTC-297N7.9-001; OTTHUMT00000440345.2
Alternative gene names: ENSG00000264016.1; CTC-297N7.9; OTTHUMG00000178048.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.7653 non-coding 
CPAT coding probability 11.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM220-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM220-1:1
4.0 lnc-TMEM220-1:1
4.1 lnc-TMEM220-1:1
5.0 lnc-TMEM220-1:1
5.1 lnc-GAS7-12:1
5.2 lnc-TMEM220-1:1