Transcript: lnc-TMEM220-1:2

Basic information

LNCipedia transcript ID: lnc-TMEM220-1:2 
LNCipedia gene ID: lnc-TMEM220-1
Ensembl Gene ID: ENSG00000264016
Ensembl Transcript ID: ENST00000579367
Location (hg19): chr17:10671490-10672306
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579367.1; CTC-297N7.9-002; OTTHUMT00000446397.1; NONHSAT145647
Alternative gene names: ENSG00000264016.1; CTC-297N7.9; OTTHUMG00000178048.2; ENSG00000264016.2; AC015908.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.3236 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM220-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM220-1:2
4.0 lnc-TMEM220-1:2
4.1 lnc-TMEM220-1:2
5.0 lnc-TMEM220-1:2
5.1 lnc-GAS7-12:4
5.2 lnc-TMEM220-1:2