Transcript: lnc-TMEM232-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM232-3:1 
LNCipedia gene ID: lnc-TMEM232-3
Location (hg19): chr5:110411896-110427813
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 628 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000507269.2; CTC-551A13.2-001; OTTHUMT00000374821.1; NONHSAT103183
Alternative gene names: ENSG00000253613.1; CTC-551A13.2; OTTHUMG00000163703.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -265.1103 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM232-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM232-3:1
4.0 lnc-TMEM232-3:1
4.1 lnc-TMEM232-3:1
5.0 lnc-TMEM232-3:1
5.1 lnc-LOX-138:1
5.2 lnc-TMEM232-3:1