Transcript: lnc-TMEM234-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM234-1:1 
LNCipedia gene ID: lnc-TMEM234-1
Ensembl Gene ID: ENSG00000224066
Ensembl Transcript ID: ENST00000421616
Location (hg19): chr1:32671099-32672415
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 786 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421616.1; RP4-622L5.7-001; OTTHUMT00000015734.3; NONHSAT002170
Alternative gene names: ENSG00000224066.1; RP4-622L5.7; OTTHUMG00000005740.3; AL049795.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -351.4576 non-coding 
CPAT coding probability 19.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM234-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM234-1:1
4.0 lnc-TMEM234-1:1
4.1 lnc-TMEM234-1:1
5.0 lnc-TMEM234-1:1
5.1 lnc-COL16A1-22:3
5.2 lnc-TMEM234-1:1