Transcript: lnc-TMEM238L-16:4

Basic information

LNCipedia transcript ID: lnc-TMEM238L-16:4 
LNCipedia gene ID: lnc-TMEM238L-16
Location (hg19): chr17:10705103-10707381
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2279 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000580310.1; AC002347.2-002; OTTHUMT00000430438.1
Alternative gene names: ENSG00000263429.1; AC002347.2; OTTHUMG00000132847.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 781.8725 coding 
CPAT coding probability 15.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM238L-16:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIRT-1:2
4.0 LINC00675:2
4.1 LINC00675:2
5.0 LINC00675:2
5.1 lnc-GAS7-16:4
5.2 lnc-TMEM238L-16:4