Transcript: lnc-TMEM238L-16:8

Basic information

LNCipedia transcript ID: lnc-TMEM238L-16:8 
LNCipedia gene ID: lnc-TMEM238L-16
Location (hg19): chr17:10698895-10701241
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 489 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000578763.1; AC002347.2-003; OTTHUMT00000441076.1
Alternative gene names: ENSG00000263429.1; AC002347.2; OTTHUMG00000132847.4; ENSG00000263429.3; LINC00675;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.611 non-coding 
CPAT coding probability 17.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM238L-16:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIRT-1:5
4.0 LINC00675:6
4.1 LINC00675:6
5.0 LINC00675:6
5.1 lnc-GAS7-16:8
5.2 lnc-TMEM238L-16:8