Transcript: lnc-TMEM252-2:4

Basic information

LNCipedia transcript ID: lnc-TMEM252-2:4 
LNCipedia gene ID: lnc-TMEM252-2
Location (hg19): chr9:71012849-71014187
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 423 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000446984.1; RP11-88I18.2-001; OTTHUMT00000052546.1
Alternative gene names: ENSG00000233178.1; RP11-88I18.2; OTTHUMG00000019964.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.0863 non-coding 
CPAT coding probability 6.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM252-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf71-2:1
4.0 lnc-C9orf71-2:1
4.1 lnc-C9orf71-2:1
5.0 lnc-C9orf71-2:1
5.1 lnc-ZFAND5-36:4
5.2 lnc-TMEM252-2:4