Transcript: lnc-TMEM252-2:5

Basic information

LNCipedia transcript ID: lnc-TMEM252-2:5 
LNCipedia gene ID: lnc-TMEM252-2
Ensembl Gene ID: ENSG00000233178
Ensembl Transcript ID: ENST00000590767
Location (hg19): chr9:71010609-71014187
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2663 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131742; ENST00000590767.1; ENST00000590767.5
Alternative gene names: ENSG00000233178.3; RP11-88I18.2; ENSG00000233178.7; AL161457.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.9463 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM252-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf71-2:5
4.0 lnc-C9orf71-2:5
4.1 lnc-C9orf71-2:5
5.0 lnc-C9orf71-2:5
5.1 lnc-ZFAND5-36:5
5.2 lnc-TMEM252-2:5