Transcript: lnc-TMEM252-2:7

Basic information

LNCipedia transcript ID: lnc-TMEM252-2:7 
LNCipedia gene ID: lnc-TMEM252-2
Ensembl Gene ID: ENSG00000233178
Ensembl Transcript ID: ENST00000629161
Location (hg19): chr9:71008799-71014065
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 743 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629161.1
Alternative gene names: ENSG00000233178.7; RP11-88I18.2; AL161457.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.0511 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM252-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf71-2:7
4.1 lnc-C9orf71-2:7
5.0 lnc-C9orf71-2:7
5.1 lnc-ZFAND5-36:7
5.2 lnc-TMEM252-2:7