Transcript: lnc-TMEM258-3:4

Basic information

LNCipedia transcript ID: lnc-TMEM258-3:4 
LNCipedia gene ID: lnc-TMEM258-3
Ensembl Gene ID: ENSG00000124915
Ensembl Transcript ID: ENST00000536405
Location (hg19): chr11:61513965-61525121
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2466 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536405; ENST00000536405.1; RP11-467L20.10-002; OTTHUMT00000398572.1; NONHSAT021699; ENST00000536405.5
Alternative gene names: ENSG00000124915; RP11-467L20.10; ENSG00000124915.6; OTTHUMG00000168170.1; ENSG00000124915.10; DKFZP434K028; AP002380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.3742 non-coding 
CPAT coding probability 93.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM258-3:4 no no no no

Available literature

  1. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf10-1:2
3.1 lnc-C11orf10-3:2
4.0 lnc-C11orf10-3:2
4.1 lnc-C11orf10-3:2
5.0 lnc-C11orf10-3:2
5.1 lnc-LTBP3-155:4
5.2 lnc-TMEM258-3:4