Transcript: lnc-TMEM38A-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM38A-3:1 
LNCipedia gene ID: lnc-TMEM38A-3
Ensembl Gene ID: ENSG00000268087
Ensembl Transcript ID: ENST00000597226
Location (hg19): chr19:16721222-16747342
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 376 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT062804; ENST00000597226.1
Alternative gene names: ENSG00000268087.1; CTC-429P9.2; AC008764.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5217 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM38A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM38A-3:1
4.0 lnc-TMEM38A-3:1
4.1 lnc-TMEM38A-3:1
5.0 lnc-TMEM38A-3:1
5.1 lnc-MAP1S-33:1
5.2 lnc-TMEM38A-3:1