Transcript: lnc-TMEM52-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM52-2:1 
LNCipedia gene ID: lnc-TMEM52-2
Location (hg19): chr1:1835918-1840524
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4607 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000043630.1|ENCT00000020763.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.8274 non-coding 
CPAT coding probability 13.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM52-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM52-2:1
5.0 lnc-TMEM52-2:1
5.1 lnc-CLSTN1-124:1
5.2 lnc-TMEM52-2:1