Transcript: lnc-TMEM70-1:11

Basic information

LNCipedia transcript ID: lnc-TMEM70-1:11 
LNCipedia gene ID: lnc-TMEM70-1
Location (hg19): chr8:74791281-74816974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1973 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000099396.1|HBMT00001395533.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.4994 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM70-1:11 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM70-1:11
5.0 lnc-TMEM70-1:11
5.1 lnc-SULF1-39:6
5.2 lnc-TMEM70-1:11