Transcript: lnc-TMEM8A-6:2

Basic information

LNCipedia transcript ID: lnc-TMEM8A-6:2 
LNCipedia gene ID: lnc-TMEM8A-6
Ensembl Gene ID: ENSG00000276984
Ensembl Transcript ID: ENST00000621088
Location (hg19): chr16:474243-474543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621088.1
Alternative gene names: ENSG00000276984.1; LA16c-359F1.1; AL023881.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.3161 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM8A-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TMEM8A-5:1
4.1 lnc-TMEM8A-1:5
5.0 lnc-TMEM8A-1:5
5.1 lnc-PKMYT1-135:2
5.2 lnc-TMEM8A-6:2