Transcript: lnc-TMEM8B-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM8B-1:1 
LNCipedia gene ID: lnc-TMEM8B-1
Location (hg19): chr9:35860383-35861853
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 611 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015967; NONHSAT130990
Alternative gene names: XLOC_007340; linc-HRCT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.2035 non-coding 
CPAT coding probability 13.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM8B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM8B-1:1
3.1 lnc-TMEM8B-1:1
4.0 lnc-TMEM8B-1:1
4.1 lnc-TMEM8B-1:1
5.0 lnc-TMEM8B-1:1
5.1 lnc-RECK-2:3
5.2 lnc-TMEM8B-1:1