Transcript: lnc-TMEM8B-1:2

Basic information

LNCipedia transcript ID: lnc-TMEM8B-1:2 
LNCipedia gene ID: lnc-TMEM8B-1
Location (hg19): chr9:35858735-35865515
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6781 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT130988; ENST00000629651.1
Alternative gene names: ENSG00000281205.1; LINC00950


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 102.4666 coding 
CPAT coding probability 18.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM8B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM8B-1:2
4.0 lnc-TMEM8B-1:2
4.1 lnc-TMEM8B-1:2
5.0 lnc-TMEM8B-1:2
5.1 lnc-RECK-2:1
5.2 lnc-TMEM8B-1:2