Transcript: lnc-TMPRSS11A-5:2

Basic information

LNCipedia transcript ID: lnc-TMPRSS11A-5:2 
LNCipedia gene ID: lnc-TMPRSS11A-5
Location (hg19): chr4:68703752-68749716
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 678 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT096714
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.1139 non-coding 
CPAT coding probability 38.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMPRSS11A-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNRHR-5:2
4.0 lnc-TMPRSS11A-5:2
4.1 lnc-TMPRSS11A-5:2
5.0 lnc-TMPRSS11A-5:2
5.1 lnc-CENPC-10:2
5.2 lnc-TMPRSS11A-5:2