Transcript: lnc-TMPRSS2-83:14

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:14 
LNCipedia gene ID: lnc-TMPRSS2-83
RefSeq ID: NR_024100
Location (hg19): chr21:42513427-42519991
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2019 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024100; NR_024100.1
Alternative gene names: PRED42; FLJ37173; LINC00323


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.6725 non-coding 
CPAT coding probability 11.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:14 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DSCAM-1:4
4.0 LINC00323:3
4.1 LINC00323:3
5.0 LINC00323:3
5.1 lnc-POFUT2-83:14
5.2 lnc-TMPRSS2-83:14