Transcript: lnc-TMPRSS2-83:5

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:5 
LNCipedia gene ID: lnc-TMPRSS2-83
Location (hg19): chr21:42551350-42558269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 495 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536486.1; AL773572.7-201
Alternative gene names: ENSG00000225745.4; AL773572.7; OTTHUMG00000086744.2; PLAC4; PRED42; FLJ37173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.0415 non-coding 
CPAT coding probability 35.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:5 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMPRSS2-4:3
4.0 lnc-TMPRSS2-4:3
4.1 LINC00323:10
5.0 LINC00323:10
5.1 lnc-POFUT2-83:5
5.2 lnc-TMPRSS2-83:5