Transcript: lnc-TMTC3-5:16

Basic information

LNCipedia transcript ID: lnc-TMTC3-5:16 
LNCipedia gene ID: lnc-TMTC3-5
Location (hg19): chr12:90494479-90501571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 207 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020512; NONHSAT029838
Alternative gene names: XLOC_009829; linc-CLLU1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -655.5728 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMTC3-5:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMTC3-5:1
3.1 lnc-TMTC3-6:1
4.0 lnc-TMTC3-6:1
4.1 lnc-TMTC3-5:16
5.0 lnc-TMTC3-5:16
5.1 lnc-TMTC3-5:16
5.2 lnc-TMTC3-5:16