Transcript: lnc-TMTC3-5:17

Basic information

LNCipedia transcript ID: lnc-TMTC3-5:17 
LNCipedia gene ID: lnc-TMTC3-5
Ensembl Gene ID: ENSG00000257194
Ensembl Transcript ID: ENST00000548722
Location (hg19): chr12:90501516-90506556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 926 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT029839; ENST00000548722.2
Alternative gene names: ENSG00000257194.2; RP11-567C2.1; AC126178.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9845 non-coding 
CPAT coding probability 6.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMTC3-5:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC3-6:3
4.0 lnc-TMTC3-6:3
4.1 lnc-TMTC3-5:17
5.0 lnc-TMTC3-5:17
5.1 lnc-TMTC3-5:17
5.2 lnc-TMTC3-5:17