Transcript: lnc-TMTC4-1:1

Basic information

LNCipedia transcript ID: lnc-TMTC4-1:1 
LNCipedia gene ID: lnc-TMTC4-1
Location (hg19): chr13:101189577-101232371
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 790 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000454752.1; RP11-151A6.4-001; OTTHUMT00000045645.1
Alternative gene names: ENSG00000224356.1; RP11-151A6.4; OTTHUMG00000017288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.6429 non-coding 
CPAT coding probability 8.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMTC4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC4-1:1
4.0 lnc-TMTC4-1:1
4.1 lnc-TMTC4-1:1
5.0 lnc-TMTC4-1:1
5.1 lnc-IRS2-40:2
5.2 lnc-TMTC4-1:1