Transcript: lnc-TNFAIP3-3:6

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:6 
LNCipedia gene ID: lnc-TNFAIP3-3
Location (hg19): chr6:137979135-137986833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 222 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230533.1|FTMT22300042701.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.9089 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:6 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP3-3:6
5.0 lnc-TNFAIP3-3:6
5.1 lnc-TBPL1-69:2
5.2 lnc-TNFAIP3-3:6