Transcript: lnc-TNFAIP3-4:2

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-4:2 
LNCipedia gene ID: lnc-TNFAIP3-4
Location (hg19): chr6:137770532-137772240
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012606
Alternative gene names: XLOC_005477; linc-TNFAIP3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP3-4:2
3.1 lnc-TNFAIP3-4:2
4.0 lnc-TNFAIP3-4:2
4.1 lnc-TNFAIP3-4:2
5.0 lnc-TNFAIP3-4:2
5.1 lnc-TBPL1-64:2
5.2 lnc-TNFAIP3-4:2