Transcript: lnc-TNFAIP3-5:5

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-5:5 
LNCipedia gene ID: lnc-TNFAIP3-5
Location (hg19): chr6:137739291-137751432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 370 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT115157
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.3039 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFAIP3-5:5
4.0 lnc-TNFAIP3-5:5
4.1 lnc-TNFAIP3-5:5
5.0 lnc-TNFAIP3-5:5
5.1 lnc-TBPL1-63:3
5.2 lnc-TNFAIP3-5:5