Transcript: lnc-TNFAIP6-1:1

Basic information

LNCipedia transcript ID: lnc-TNFAIP6-1:1 
LNCipedia gene ID: lnc-TNFAIP6-1
Ensembl Gene ID: ENSG00000228064
Ensembl Transcript ID: ENST00000425983
Location (hg19): chr2:151839020-151859988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003036; ENST00000425983.1; AC023469.2-001; OTTHUMT00000332399.1; NONHSAT074947
Alternative gene names: XLOC_001708; linc-TNFAIP6-1; ENSG00000228064.1; AC023469.2; OTTHUMG00000153782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.8034 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP6-1:1
3.1 lnc-TNFAIP6-1:1
4.0 lnc-TNFAIP6-1:1
4.1 lnc-TNFAIP6-1:1
5.0 lnc-TNFAIP6-1:1
5.1 lnc-KCNJ3-30:1
5.2 lnc-TNFAIP6-1:1