Transcript: lnc-TNFAIP6-2:15

Basic information

LNCipedia transcript ID: lnc-TNFAIP6-2:15 
LNCipedia gene ID: lnc-TNFAIP6-2
RefSeq ID: NR_110246
Location (hg19): chr2:151485411-151491871
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110246; NR_110246.1
Alternative gene names: LOC101929282


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.3936 non-coding 
CPAT coding probability 6.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP6-2:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFAIP6-2:15
4.0 lnc-TNFAIP6-2:15
4.1 lnc-TNFAIP6-2:15
5.0 lnc-TNFAIP6-2:15
5.1 lnc-KCNJ3-31:11
5.2 lnc-TNFAIP6-2:15