Transcript: lnc-TNFAIP6-3:2

Basic information

LNCipedia transcript ID: lnc-TNFAIP6-3:2 
LNCipedia gene ID: lnc-TNFAIP6-3
Location (hg19): chr2:151352732-151376056
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 858 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000045032.1|ENCT00000230777.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.4713 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP6-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP6-3:2
5.0 lnc-TNFAIP6-3:2
5.1 lnc-KCNJ3-32:1
5.2 lnc-TNFAIP6-3:2