Transcript: lnc-TNFAIP8-8:1

Basic information

LNCipedia transcript ID: lnc-TNFAIP8-8:1 
LNCipedia gene ID: lnc-TNFAIP8-8
Location (hg19): chr5:118463897-118464783
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 887 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT103422
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.214 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP8-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFAIP8-8:1
4.0 lnc-TNFAIP8-8:1
4.1 lnc-TNFAIP8-8:1
5.0 lnc-TNFAIP8-8:1
5.1 lnc-AP3S1-48:1
5.2 lnc-TNFAIP8-8:1