Transcript: lnc-TNFAIP8L1-1:7

Basic information

LNCipedia transcript ID: lnc-TNFAIP8L1-1:7 
LNCipedia gene ID: lnc-TNFAIP8L1-1
Location (hg19): chr19:4584355-4586076
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 645 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000038299.1|HBMT00000696242.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.0923 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP8L1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP8L1-1:7
5.0 lnc-TNFAIP8L1-1:7
5.1 lnc-RPL36-38:3
5.2 lnc-TNFAIP8L1-1:7