Transcript: lnc-TNFRSF21-1:1

Basic information

LNCipedia transcript ID: lnc-TNFRSF21-1:1 
LNCipedia gene ID: lnc-TNFRSF21-1
Location (hg19): chr6:47495926-47496397
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 338 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412489.1; RP11-385F7.2-001; OTTHUMT00000040815.1; NONHSAT113036
Alternative gene names: ENSG00000225515.1; RP11-385F7.2; OTTHUMG00000014797.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8063 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF21-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF21-1:1
4.0 lnc-TNFRSF21-1:1
4.1 lnc-TNFRSF21-1:1
5.0 lnc-TNFRSF21-1:1
5.1 lnc-PGK2-15:1
5.2 lnc-TNFRSF21-1:1