Transcript: lnc-TNMD-4:1

Basic information

LNCipedia transcript ID: lnc-TNMD-4:1 
LNCipedia gene ID: lnc-TNMD-4
Location (hg19): chrX:99928327-99928978
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 652 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000568809.1; RP11-524D16__A.3-001; OTTHUMT00000430515.1; NONHSAT137895
Alternative gene names: ENSG00000261295.1; RP11-524D16__A.3; OTTHUMG00000175567.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNMD-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRPX2-1:1
4.0 lnc-SRPX2-1:1
4.1 lnc-SRPX2-1:1
5.0 lnc-SRPX2-1:1
5.1 lnc-TEX13C-273:1
5.2 lnc-TNMD-4:1