Transcript: lnc-TNN-2:1

Basic information

LNCipedia transcript ID: lnc-TNN-2:1 
LNCipedia gene ID: lnc-TNN-2
Ensembl Gene ID: ENSG00000260990
Ensembl Transcript ID: ENST00000569593
Location (hg19): chr1:175276354-175304595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 847 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569593.1; RP3-518E13.2-001; OTTHUMT00000084415.1; NONHSAT007753
Alternative gene names: ENSG00000260990.1; RP3-518E13.2; OTTHUMG00000034877.1; Z94057.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.8098 non-coding 
CPAT coding probability 9.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNN-2:1
4.0 lnc-TNN-2:1
4.1 lnc-TNN-2:1
5.0 lnc-TNN-2:1
5.1 lnc-SOAT1-31:1
5.2 lnc-TNN-2:1