Transcript: lnc-TNP1-1:2

Basic information

LNCipedia transcript ID: lnc-TNP1-1:2 
LNCipedia gene ID: lnc-TNP1-1
Ensembl Gene ID: ENSG00000231597
Ensembl Transcript ID: ENST00000440900
Location (hg19): chr2:217719112-217719855
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003497; ENST00000440900.1; AC007557.4-001; OTTHUMT00000339426.1
Alternative gene names: XLOC_002485; linc-IGFBP5; ENSG00000231597.1; AC007557.4; OTTHUMG00000155312.1; AC007557.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.1818 non-coding 
CPAT coding probability 3.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNP1-1:2
3.1 lnc-TNP1-1:2
4.0 lnc-TNP1-1:2
4.1 lnc-TNP1-1:2
5.0 lnc-TNP1-1:2
5.1 lnc-MREG-20:2
5.2 lnc-TNP1-1:2