Transcript: lnc-TNPO3-1:34

Basic information

LNCipedia transcript ID: lnc-TNPO3-1:34 
LNCipedia gene ID: lnc-TNPO3-1
Location (hg19): chr7:128540557-128543422
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 527 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000135253.9|FTMT22500038735.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.2081 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNPO3-1:34 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNPO3-1:34
5.0 lnc-TNPO3-1:34
5.1 lnc-UBE2H-14:6
5.2 lnc-TNPO3-1:34