Transcript: lnc-TNRC6B-2:1

Basic information

LNCipedia transcript ID: lnc-TNRC6B-2:1 
LNCipedia gene ID: lnc-TNRC6B-2
RefSeq ID: NR_039988
Location (hg19): chr22:40428336-40432581
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4246 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT086830; NR_039988; NR_039988.1
Alternative gene names: LOC100130899


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7091 non-coding 
CPAT coding probability 60.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TNRC6B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM83F-2:1
4.0 lnc-FAM83F-2:1
4.1 lnc-FAM83F-2:1
5.0 lnc-FAM83F-2:1
5.1 lnc-XPNPEP3-21:1
5.2 lnc-TNRC6B-2:1