Transcript: lnc-TOMM20-7:2

Basic information

LNCipedia transcript ID: lnc-TOMM20-7:2 
LNCipedia gene ID: lnc-TOMM20-7
Location (hg19): chr1:235145683-235147709
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2027 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098991.1|FTMT20200012995.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.7012 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOMM20-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TOMM20-7:2
5.0 lnc-TOMM20-7:2
5.1 lnc-SIPA1L2-43:2
5.2 lnc-TOMM20-7:2