Transcript: lnc-TOP1-11:1

Basic information

LNCipedia transcript ID: lnc-TOP1-11:1 
LNCipedia gene ID: lnc-TOP1-11
Location (hg19): chr20:39123158-39124592
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1435 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053250.1|FTMT28000002125.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.7917 non-coding 
CPAT coding probability 3.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOP1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TOP1-11:1
5.0 lnc-TOP1-11:1
5.1 lnc-DLGAP4-58:1
5.2 lnc-TOP1-11:1