Transcript: lnc-TOP3B-1:2

Basic information

LNCipedia transcript ID: lnc-TOP3B-1:2 
LNCipedia gene ID: lnc-TOP3B-1
Location (hg19): chr22:22345497-22398332
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3038 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000337471
Alternative gene names: ENSG00000197549; PRAMEL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1176.7077 coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TOP3B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOP3B-1:2
3.1 lnc-TOP3B-1:2
4.0 lnc-TOP3B-1:2
4.1 lnc-TOP3B-1:2
5.0 lnc-TOP3B-1:2
5.1 lnc-SCARF2-43:2
5.2 lnc-TOP3B-1:2