Transcript: lnc-TOP3B-1:3

Basic information

LNCipedia transcript ID: lnc-TOP3B-1:3 
LNCipedia gene ID: lnc-TOP3B-1
Location (hg19): chr22:22345496-22398256
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1869 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000419303
Alternative gene names: ENSG00000197549; PRAMEL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1176.7077 coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TOP3B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOP3B-1:3
3.1 lnc-TOP3B-1:3
4.0 lnc-TOP3B-1:3
4.1 lnc-TOP3B-1:3
5.0 lnc-TOP3B-1:3
5.1 lnc-SCARF2-43:3
5.2 lnc-TOP3B-1:3