Transcript: lnc-TOX3-1:16

Basic information

LNCipedia transcript ID: lnc-TOX3-1:16 
LNCipedia gene ID: lnc-TOX3-1
Ensembl Gene ID: ENSG00000261190
Ensembl Transcript ID: ENST00000622950
Location (hg19): chr16:52060264-52107814
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622950.3
Alternative gene names: ENSG00000261190.5; C16orf97


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -570.9305 non-coding 
CPAT coding probability 9.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-152O14.5.1-1:10
4.1 lnc-RP11-152O14.5.1-1:10
5.0 lnc-RP11-152O14.5.1-1:10
5.1 lnc-CFAP20-119:8
5.2 lnc-TOX3-1:16