Transcript: lnc-TOX3-1:20

Basic information

LNCipedia transcript ID: lnc-TOX3-1:20 
LNCipedia gene ID: lnc-TOX3-1
Location (hg19): chr16:52039391-52060347
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 204 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025002; NONHSAT142490
Alternative gene names: XLOC_011939; linc-SALL1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-152O14.2.1-2:2
3.1 lnc-RP11-152O14.2.1-2:2
4.0 lnc-RP11-152O14.5.1-1:13
4.1 lnc-RP11-152O14.5.1-1:13
5.0 lnc-RP11-152O14.5.1-1:13
5.1 lnc-CFAP20-119:12
5.2 lnc-TOX3-1:20