Transcript: lnc-TP53INP1-2:1

Basic information

LNCipedia transcript ID: lnc-TP53INP1-2:1 
LNCipedia gene ID: lnc-TP53INP1-2
Ensembl Gene ID: ENSG00000254248
Ensembl Transcript ID: ENST00000518598
Location (hg19): chr8:96083960-96100152
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 794 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518598.1; RP11-320N21.2-001; OTTHUMT00000379848.1; NONHSAT127820
Alternative gene names: ENSG00000254248.1; RP11-320N21.2; OTTHUMG00000164704.1; AC068189.2; AC068189.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.1677 non-coding 
CPAT coding probability 7.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53INP1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TP53INP1-2:1
4.0 lnc-TP53INP1-2:1
4.1 lnc-TP53INP1-2:1
5.0 lnc-TP53INP1-2:1
5.1 lnc-ZNF706-140:1
5.2 lnc-TP53INP1-2:1

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