Transcript: lnc-TP53RK-1:1

Basic information

LNCipedia transcript ID: lnc-TP53RK-1:1 
LNCipedia gene ID: lnc-TP53RK-1
Ensembl Gene ID: ENSG00000236028
Ensembl Transcript ID: ENST00000414085
Location (hg19): chr20:45529782-45530365
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 423 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414085; ENST00000414085.1; RP11-323C15.2-001; OTTHUMT00000079584.1; NONHSAT080037
Alternative gene names: ENSG00000236028; RP11-323C15.2; ENSG00000236028.1; OTTHUMG00000032661.1; AL354766.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -432.563 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53RK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TP53RK-1:1
3.1 lnc-TP53RK-1:1
4.0 lnc-TP53RK-1:1
4.1 lnc-TP53RK-1:1
5.0 lnc-TP53RK-1:1
5.1 lnc-SULF2-26:2
5.2 lnc-TP53RK-1:1