Transcript: lnc-TP53TG3-8:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3-8:1 
LNCipedia gene ID: lnc-TP53TG3-8
Location (hg19): chr16:32114566-32163834
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000564145.1; RP11-1166P10.8-001; OTTHUMT00000432532.1; NONHSAT141988
Alternative gene names: ENSG00000261483.1; RP11-1166P10.8; OTTHUMG00000176560.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5189 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TP53TG3-8:1
4.0 lnc-TP53TG3-8:1
4.1 lnc-TP53TG3-8:1
5.0 lnc-TP53TG3-8:1
5.1 lnc-SULT1A2-130:1
5.2 lnc-TP53TG3-8:1